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Showing posts with the label Snakemake
How To Do A Partial Expand In Snakemake?

How To Do A Partial Expand In Snakemake?

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I'm trying to first generate 4 files, for the LETTERS x NUMS combinations, then summarize over … Read more How To Do A Partial Expand In Snakemake?
Specifying Python Version Within Snakemake Using Script Parameter

Specifying Python Version Within Snakemake Using Script Parameter

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I have some code that I am incorporating into a Snakemake pipeline. I also want to be able to run t… Read more Specifying Python Version Within Snakemake Using Script Parameter
Use Of Argparse In Snakemake Script

Use Of Argparse In Snakemake Script

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Is it possible to pass custom command line arguments to snakemake scripts? I have tried, but execut… Read more Use Of Argparse In Snakemake Script
Snakemake Workflow On Split Files

Snakemake Workflow On Split Files

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Perhaps this question has already been answered but I could not come up with the correct query to f… Read more Snakemake Workflow On Split Files
Parallelizing Snakemake Rule

Parallelizing Snakemake Rule

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Sorry if this is a naive question, but I'm still trying to wrap my head around the intricacies … Read more Parallelizing Snakemake Rule